GenBank

Download

Manual

• Installing CDSParser
• Importing Data
• Grouping & Deleting Names
• Creating Fasta Files
• Creating Tab-delimited Files
• Troubleshooting Errors
• File Types
• Example .def Files

Contact Us

Manual for CDSParser 1.0

Table of Contents

1. Installing CDSParser 1.0
   • Downloading CDSParser 1.0
   • Installing CDSParser 1.0
   • Running CDSParser 1.0
   Importing Data
   • Downloading GBSeq XML files
   • Input file format
   • Import from file
   • Import from clipboard
2. Grouping and Deleting Names
   • Purpose
   • Display description
   • Option 1: Put name(s) into a new or existing group
   • Option 2: Put all ungrouped names into individual groups
   • Option 3: Remove name(s) from a group
   • Option 4: Put name(s) into the delete set
   • Option 5: Put all ungrouped names into the delete set
   • Option 6: Remove name(s) from the delete set
   • Option 7: Save current groups to disk
   • Option 8: Load group file
3. Creating Fasta Files And Using ClustalW
   • Purpose
   • FASTA content description
   • Using ClustalW with CDSParser
4. Creating Tab-delimited Output Files
   • Record
   • Taxa
   • Configuring with defaults.def
5. Troubleshooting Errors
   • Input errors
   • File errors
   • Sequence errors
   • ClustalW errors
6. File Types
   • *.cgi
   • *.fasta
   • Key
   • *.grp
   • *.def
   • *.aln
   • *.tre
   • *.nj
   • *.ph
   • Tab-delimited
7. Example .def Files
   • defaults.def
   • clustal.def